PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25436.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 217aa    MW: 25414.7 Da    PI: 4.6686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25436.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.17.6e-2891361128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                lppGfrF Ptdeel+ ++L +kv + +    ++i+ vd+  ++Pw++  +++++e+ ++yfFsk+ +         ++t++gyWk+   +++++++  ++
  PK25436.1   9 LPPGFRFCPTDEELILQFLYPKVFALPSAHPNIIPYVDLRLHQPWEFTgTALSSENMHYYFFSKTTE--------GKVTSNGYWKEMDMNEPIFVSgANN 100
                79*************************999899**************95566566667788887644........568999*************987778 PP

        NAM  99 lvglkktLvfy......kgrapkgektdWvmheyrl 128
                +vg+kk  v+y      +++  ++++t+Wvm+ey+l
  PK25436.1 101 KVGVKKYYVYYvtnhgyHQSPTSATETNWVMEEYNL 136
                8**********99877667888899*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-336169IPR003441NAC domain
PROSITE profilePS5100534.7029171IPR003441NAC domain
PfamPF023656.1E-2010136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGDNQSVKLP PGFRFCPTDE ELILQFLYPK VFALPSAHPN IIPYVDLRLH QPWEFTGTAL  60
SSENMHYYFF SKTTEGKVTS NGYWKEMDMN EPIFVSGANN KVGVKKYYVY YVTNHGYHQS  120
PTSATETNWV MEEYNLCNNL ELMSTTICPT YKRRRKQKLD FKWVLCRVHE RKMEDISLKS  180
VQYEDDDNGT ELSCLDEMFL SALDDDDFEE ISMQILD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-21717218169NAC domain-containing protein 19
3swm_B9e-21717218169NAC domain-containing protein 19
3swm_C9e-21717218169NAC domain-containing protein 19
3swm_D9e-21717218169NAC domain-containing protein 19
3swp_A9e-21717218169NAC domain-containing protein 19
3swp_B9e-21717218169NAC domain-containing protein 19
3swp_C9e-21717218169NAC domain-containing protein 19
3swp_D9e-21717218169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090830.13e-74NAC domain-containing protein 29
TrEMBLA0A060A5Q66e-76A0A060A5Q6_BOENI; NAC domain-containing protein
STRINGVIT_04s0044g01500.t014e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-43xylem NAC domain 1